Cluster of Excellence –
University of Freiburg

On the track of nitrogenase

Freiburg researchers take a decisive step towards understanding biological nitrogen fixation
The active center of the vanadium-bearing nitrogenase has a metal center from which a sulfur ion (yellow) is removed after activation, releasing a binding site for nitrogen on two of the seven iron ions (grey). Source: Oliver Einsle

Another step has been taken towards explaining the molecular mechanisms of biological fixation of nitrogen by the enzyme nitrogenase: Dr. Daniel Sippel from Prof. Dr. Oliver Einsle’s work group at the Institute of Biochemistry of the University of Freiburg has shown that the iron-vanadium cofactor (FeVco) of the enzyme can release and re-bind one single sulfur ion. Previously, the Freiburg researchers were able to partly analyze the center of another nitrogenase, the iron-molybdenum cofactor (FeMoco). In order to understand its reactions better, Schiller studied a special variant of the enzyme, which contained the element vanadium instead of molybdenum, leading to a series of easily-modified chemical characteristics. When FeVco releases the sulfur ion, the binding site for nitrogen becomes available. So then two amino acids, parts of the protein, are available to supply the protons required for the reaction and keep the permuted nitrogen compound precisely in place. The researchers have presented their results in the latest issue of the scientific journal Science.

The work group has been studying nitrogenase for a long time with the aim of making it usable for biotechnology. With it they hope to offer an alternative to industrial chemical fertilization methods such as the Haber-Bosch process, which combines nitrogen with hydrogen to make ammonia. In nature, nitrogenase is the sole enzyme to create the same reaction, however it does so without releasing surplus nitrogen compounds into the environment. Until now however the functioning of this complex, metalliferous enzyme system has not been fully explained. The information obtained by Sippel will form a new basis for the understanding of the molecular mechanisms of nitrogen fixation. This enables the researchers to understand a variety of accumulated data better and integrate them into an overall picture of the reaction of this enzyme.

 

Original publication:

A bound reaction intermediate sheds light on the mechanism of nitrogenase.
Sippel D, Rohde M, Netzer J, Trncik C, Gies J, Grunau K, Djurdjevic I, Decamps L, Andrade SLA, Einsle O.
Science. 2018 Mar 30;359(6383):1484-1489

http://science.sciencemag.org/content/359/6383/1484.long